Index

A

alias, [1] alias=

Arvados arvados_job

B

bam

C

collate

collate_metrics Crunch

E

environment variable LD_LIBRARY_PATH PATH, [1] SGE_ROOT

export external

F

fasta

G

generate= group_alias

group_regex groupby

I

ignore, [1], [2]

instance

K

Keep

L

LD_LIBRARY_PATH

M

memory_default memory_resource

metric metrics

N

num_jobs

O

only_collate

options

P

parallel_environment PATH, [1] pattern_out

prefix prefix= priority

Q

queue

R

regex, [1] regex_in

run runner, [1], [2] runners

S

schema (optional) SGE_ROOT

split split_metrics

T

tags task_specific: timings

tool tools tsv

U

upload_as_matrix upload_melted upload_normalize

upload_separate upload_transpose url (optional) uuid

V

vcf